Comparative Scatterplot of Two SpatialExperiments — plot

Creates a scatterplot to compare deconvolution results between two SpatialExperiment objects.

Usage

plot_scatter(
  spe = NULL,
  value1,
  value2,
  spe1 = NULL,
  spe2 = NULL,
  log_scale = FALSE,
  dot_color = "#1f77b4",
  point_alpha = 0.8,
  fix_coords = FALSE,
  coord_range = NULL,
  title = "Comparative Scatterplot"
)

Arguments

spe: SpatialExperiment with quantification results
value1: Deconvolution result to plot from the first object.
value2: Deconvolution result to plot from the second object.
spe1: First SpatialExperiment object.
spe2: Second SpatialExperiment object.
log_scale: Logical, whether to use log scale for axes.
dot_color: Color for the dots in the plot.
point_alpha: Alpha for the dots, controlling transparency.
fix_coords: Logical, whether to fix coordinate system to be equal.
coord_range: Numeric vector of length 2 to set coordinate limits.
title: Title of the plot.

Value

A scatterplot