Plot Overview of a SpatialExperiment

Creates an interactive Plotly scatter plot of spatial coordinates from a SpatialExperiment. Points are colored by total UMI counts and include tooltips showing full-resolution row/column coordinates. The y-axis is inverted for easier visual interpretation.

Usage

plot_overview(spe, sample_id = "sample01")

Arguments

spe

A SpatialExperiment containing spatial coordinates and counts.

sample_id

Sample ID to filter (default: "sample01").

Value

An interactive Plotly object with spots colored by nUMI.