This function creates an interactive scatter plot of the spatial coordinates
from a SpatialExperiment object. The plot is rendered using Plotly,
allowing for interactive exploration with tooltips displaying the full
resolution row and column coordinates and the associated nUMI values.
The y-axis is inverted for better visual representation.
Usage
plot_overview(spe, sample_id = "sample01")
Arguments
- spe
A SpatialExperiment object.
This is the main data object containing spatial coordinates and UMI counts.
- sample_id
A character string specifying the sample ID to be used for filtering
the SpatialExperiment object. Defaults to "sample01".
Value
An interactive Plotly object representing the spatial distribution
of UMI counts across the provided SpatialExperiment object.
Each point on the plot corresponds to a spatial location,
colored by the number of UMIs.
