Compute L-R score for each spot
get_lr.Rd
Compute L-R score for each spot
Arguments
- spe
SpatialExperiment object
- resource
"consensus" table from Omnipath as default, the user can provide a data frame containing L-R pairs. The data frame should contain at least the following two columns: source_genesymbol = ligands, target_genesymbol = receptors
- method
mathematical approach to compute L-R scores. Options: min, and product L-R, default is product
- organism
choose the organism to be considered, default human, options: human or mouse