Fetch decoupleR Reference Networks
get_decoupleR_reference.Rd
Retrieves pathway or transcription factor target networks from
decoupleR (Progeny, DoRothEA, or CollecTRI).
Usage
get_decoupleR_reference(
method = "progeny",
organism = "human",
n_genes = 500,
confidence = NULL,
...
)Arguments
- method
-
Reference to retrieve:
"progeny","dorothea", or"collectri". - organism
-
Target organism (e.g.,
"human"or"mouse"). - n_genes
-
Number of top genes for Progeny (only used with
"progeny"). - confidence
-
Confidence levels (A-E) to filter DoRothEA targets (only used with
"dorothea"). - ...
-
Additional parameters passed to
decoupleR.