Get cluster features

Get cluster features

Usage

get_cluster_features(
  spe,
  clusterid = NULL,
  topn = 3,
  spmethod = NULL,
  zscore = TRUE
)

Arguments

spe

spatialExperiment with cluster results

clusterid

= name of the column with the clustering results

topn

number of top features to be shown

spmethod

spatial method used for the clustering, must be dorothea, collectri, progeny, expression or the name of the deconvolution method used

zscore

= if the results should be z-score scaled or not