Get Cluster Features — get_cluster_features • spacedeconv

Summarizes top features per cluster from expression data or selected result columns, with optional z-score scaling. Features are ranked by their mean (or z-scored mean) within each cluster, and the top topn are returned.

Usage

get_cluster_features(
  spe,
  clusterid = NULL,
  topn = 3,
  spmethod = NULL,
  zscore = TRUE
)

Arguments

spe: SpatialExperiment with clustering results.
clusterid: Name of the column containing cluster labels.
topn: Number of top features to return per cluster.
spmethod: Method used for clustering (e.g., dorothea, collectri, progeny, expression, or a deconvolution method token).
zscore: Logical; z-score scale features before ranking.