Computes a per-spot gene set score (sum of log expression) and
stores it in colData.
Usage
gene_set_score(spe, genes = NULL, assay = "cpm", name = "geneSet")
Arguments
-
spe
-
SpatialExperiment.
-
genes
Vector of gene symbols for the gene set.
-
assay
Assay to use (default: "cpm").
-
name
Name of the result column.
Value
Updated SpatialExperiment with the gene set score.
