List of supported deconvolution methods

List of supported deconvolution methods

Usage

deconvolution_methods

Format

An object of class character of length 32.

Details

Spatial Algorithms
RCTD, SPOTlight, CARD, spatialDWLS, Cell2Location, DOT

Second-generation Algorithms (Omnideconv)
AutoGeneS, BayesPrism, Bisque, BSeq-sc, CIBERSORTx, CDSeq, CPM, DWLS, MOMF, MuSiC, Scaden, SCDC

First-generation Methods (Immunedeconv)
MCPcounter, EPIC, quanTIseq, xCell, CIBERSORT, CIBERSORT (abs.), TIMER, ConsensusTME, ABIS, ESTIMATE

First-generation Mouse Methods (Immunedeconv)
mMCPcounter, seqImmuCC, DCQ, BASE

This object is a named vector. The names correspond to the display name of the method, the values to the internal name.