Deconvolute with SPOTlight
deconvolute_spotlight.Rd
Runs SPOTlight deconvolution and returns a deconvolution matrix
with column names prefixed by result_name.
Usage
deconvolute_spotlight(
spatial_obj,
model = NULL,
assay_sp = "counts",
result_name = "spotlight"
)Arguments
- spatial_obj
-
SpatialExperiment. - model
-
SPOTlight model from
build_model_spotlight(). - assay_sp
Spatial assay to use.
- result_name
-
Prefix used to label result columns (default: "spotlight").