Deconvolute with SpatialDWLS — deconvolute_spatial_dwls • spacedeconv

Runs the SpatialDWLS workflow and returns a deconvolution matrix with column names prefixed by result_name.

Usage

deconvolute_spatial_dwls(
  spatial_obj,
  signature,
  assay_sp = "counts",
  result_name = "spatialdwls",
  ...
)

Arguments

spatial_obj: SpatialExperiment.
signature: Signature matrix from build_model_spatial_dwls().
assay_sp: Spatial assay to use.
result_name: Prefix used to label result columns (default: "spatialdwls").
...: Additional parameters passed to Giotto.