Deconvolute Immunedeconv mouse

Usage

deconvolute_immunedeconv_mouse(
  spatial_obj,
  method = NULL,
  rmgenes = NULL,
  algorithm = NULL,
  assay_sp = "counts",
  result_name = NULL,
  ...
)

Arguments

spatial_obj: SpatialExperiment
method: deconvolution algorithm
rmgenes: genes to remove from the analysis
algorithm: statistical algorithm for SeqImmuCC (ignored by all other methods)
assay_sp: assay of spatial object to use
result_name: token to identify deconvolution results in object, default = deconvolution method
...: additional parameters passed to function