Deconvolute with immunedeconv — deconvolute_immunedeconv • spacedeconv

Runs a first-generation immunedeconv method on the expression matrix and returns a deconvolution matrix with prefixed column names.

Usage

deconvolute_immunedeconv(
  spatial_obj,
  method = NULL,
  assay_sp = "counts",
  result_name = NULL,
  ...
)

Arguments

spatial_obj: SpatialExperiment.
method: Immunedeconv method token (see spacedeconv::deconvolution_methods).
assay_sp: Spatial assay to use.
result_name: Prefix used to label result columns (defaults to method).
...: Further parameters passed to the selected immunedeconv method.