Added unified signature matrix getter functions for all deconvolution methods (EpiDISH, Houseman, MethylCC, MethylResolver, MethAtlas), with consistent data frame output and documentation.
All deconvolution methods now check for overlap between input and reference CpGs, issuing warnings if overlap is low.
Extended and improved vignettes: new vignettes for signatures, visualization, and contributing; improved getting started guide; new navbar dropdown in documentation.
Clarified expected input structure for visualization functions in documentation.
Enhanced test suite: more robust tests for CpG overlap, output structure, and method extensions.
Improved and reorganized documentation: new manual pages, improved roxygen2 docs, and reorganized documentation files.
CI/CD improvements: manual installation of preprocessCore for compatibility; simplified getting started vignette for CI stability.
Increased CpG count in overlap tests to avoid singular matrix errors.
Various bugfixes and clarifications in vignettes and documentation.
methyldeconv 0.0.3
rebranded methylDeconv to methyldeconv
methylDeconv 0.0.2
First version of package.
methylDeconv 0.0.1
Added a NEWS.md file to track changes to the package.