Package index

All functions

check_input()

Check input matrices

check_input_beta()

Check input beta matrix

check_input_mset()

Check input methylSet

create_beta()

Create beta matrix from a methylset matrices

deconvolute()

Deconvolution with methyldeconv

deconvolute_combined()

Run selected set of methods and average results

deconvolution_methods

List of supported deconvolution methods

init_python()

Initialize Python Environment with Miniconda

methyldeconvstartup

Manage python dependencies according to: https://rstudio.github.io/reticulate/articles/python_dependencies.html#manual-configuration

normalize_deconv_results()

Normalize deconvolution result

rename_cell_types()

Rename Cell Types in Deconvolution Results

results_aggregated_boxplot()

Function to plot the results from deconvolute_combined() as boxplots for each celltype and celltype

results_barplot()

Function to plot the results from deconvolute() as barplots for each sample

results_boxplot()

Function to plot the results from deconvolute() as boxplots for each celltype

run_epidish()

run EpiDISH

run_houseman()

Run the improved Houseman method

run_methatlas()

run MethAtlas

run_methylcc()

run methylCC deconvolution

run_methylresolver()

Run MethylResolver