Package index

All functions

check_input()

Check input matrices

check_input_beta()

Check input beta matrix

check_input_mset()

Check input methylSet

compare_results()

Show scatterplot that compares two results.

create_beta()

Create beta matrix from a methylset matrices

deconvolute()

Deconvolution

deconvolution_methods

List of supported deconvolution methods

init_python()

Initialize Python Environment with Miniconda

normalize_deconv_results()

Normalize deconvolution result

rename_cell_types()

Rename Cell Types in Deconvolution Results

run_all_methods()

Run all available deconvolution methods

run_epidish()

run EpiDISH

run_flowsortedblood()

Run the improved Houseman method

run_meth_atlas()

run meth_atlas

run_methylcc()

run methylCC deconvolution

run_methylresolver()

Run MethylResolver

visualize_result_bar()

Function to visualize the results from deconvolute() as a stacked bar plot.

visualize_result_box()

Function to visualize specific cell types of result from deconvolute() as box plot.

visualize_results()

Function to plot the results from deconvolute() or run_all_methods() as boxplots.