Package index
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check_input() - Check input matrices
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check_input_beta() - Check input beta matrix
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check_input_mset() - Check input methylSet
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create_beta() - Create beta matrix from a methylset matrices
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deconvMestartup - Manage python dependencies according to: https://rstudio.github.io/reticulate/articles/python_dependencies.html#manual-configuration
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deconvolute() - Deconvolution with deconvMe
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deconvolute_combined() - Run multiple deconvolution methods and create aggregated results
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deconvolution_methods - List of supported deconvolution methods
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get_epidish_signature_matrix() - Get EpiDISH Signature Matrix
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get_houseman_signature_matrix() - Get Houseman Signature Matrix
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get_methatlas_signature_matrix() - Get MethAtlas Signature Matrix
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get_methylcc_signature_matrix() - Get MethylCC Signature Matrix (DMRs)
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get_methylresolver_signature_matrix() - Get MethylResolver Signature Matrix
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init_python() - Initialize Python Environment with Miniconda
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normalize_deconv_results() - Normalize deconvolution result
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rename_cell_types() - Rename Cell Types in Deconvolution Results
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results_aggregated_boxplot() - Function to plot aggregated deconvolution results as boxplots for each cell type and method
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results_barplot() - Function to plot deconvolution results as barplots for each sample
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results_boxplot() - Function to plot deconvolution results as boxplots for each cell type
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run_epidish() - run EpiDISH
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run_houseman() - Run the improved Houseman method
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run_methatlas() - run MethAtlas
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run_methylcc() - run methylCC deconvolution
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run_methylresolver() - Run MethylResolver