Extraction of the signature matrix from autogenes .pickle files

extract_signature_autogenes(
  autogenes_pickle_path,
  single_cell_object,
  cell_type_annotations
)

Arguments

autogenes_pickle_path: The path of the .pickle file generated by autogenes, exactly as returned by the build_model_autogenes function
single_cell_object: The matrix with the single-cell data used to build the signature. Rows are genes, columns are samples. Row and column names need to be set.
cell_type_annotations: The vector of the cell type annotations used to build the signature. Has to be in the same order as the samples in single_cell_object.

The signature matrix.