Deconvolute using quanTIseq
deconvolute_quantiseq(gene_expression_matrix, tumor, arrays, scale_mrna, ...)a m x n matrix with m genes and n samples
Set to TRUE if dealing with tumor samples. if TRUE, signature genes with high expression in tumor samples are removed.
Set to TRUE if working with Microarray data instead of RNA-seq
Set to FALSE to disable correction for cell type-specific differences in mRNA content
passed through to original quantiseq method. A native argument takes precedence
over an immunedeconv argument (e.g. mRNAscale takes precedence over scale_mrna)
See deconvolute_quantiseq.default().