Deconvolute using mMCP-counter

Deconvolute using mMCP-counter

deconvolute_mmcp_counter(
  gene_expression_matrix,
  log2 = TRUE,
  gene_id = "Gene.Symbol",
  genome = "GCRm39"
)

Arguments

gene_expression_matrix

a m x n matrix with m genes and n samples. Should be TPM normalized

log2

logical. If TRUE, log2 transforms the expression matrix

gene_id

specifies the format of the gene IDs. Possible choices are 'Gene.Symbol' (default), 'ENSEMBL.ID' or 'Probes' (Affymetrix array probes)

genome

specifies the mouse genome version to use, GCRm39 (default) or GCRm38