Deconvolute using MCP-counter

Deconvolute using MCP-counter

deconvolute_mcp_counter(
  gene_expression_matrix,
  feature_types = "HUGO_symbols",
  ...
)

Arguments

gene_expression_matrix

a m x n matrix with m genes and n samples

feature_types

type of identifiers used for expression features. May be one of "affy133P2_probesets","HUGO_symbols","ENTREZ_ID"

...

passed through to original MCP-counter function. A native argument takes precedence over an immunedeconv argument (e.g. featureType takes precedence over feature_types) See MCPcounter.estimate.