Cell types obtained with this method can be further reduced with the map_result_to_celltypes function, using 'DCQ' as the method
deconvolute_dcq(
gene_expression_matrix,
ref_samples = NULL,
n_repeats = 10,
combine_cells = TRUE,
...
)a m x n matrix with m genes and n samples
a vector containing the names of the samples to be used to standardize the expressions. If NULL, all the samples are used.
the number of models to generate. Predicted cell quantities will then be averaged.
logical. This method estimates several cell types (~200). If TRUE (default), these are combined into 19 major immune-stromal cell types.
passed through to original quantiseq method. A native argument takes precedence over an immunedeconv argument