Example RNA-seq dataset from the mMCP_Counter publication.

A dataset of six RNA-seq samples from mouse blood and spleen, and associated 'gold standard' immune cell estimates profiled with fluorescence activated cell sorting (FACS)

dataset_petitprez

Format

an environment with two objects: (1) expr_mat: gene expression matrix with gene_symbols as rownames and sample identifiers as colum names. Counts are TPM-normalized (2) ref: FACS measurements in a data.frame

Source

Petitprez et al. (2020), https://doi.org/10.1186/s13073-020-00783-w