omnideconv is an ecosystem of user-friendly tools and resources for cell-type deconvolution.
The omnideconv ecosystem has been developed in a joint effort of the Group of Computational Biomedicine (University of Innsbruck, Austria) and the Group of Data Science in Systems Biology (TUM School of Life Sciences, Germany).
Explore our collection of tools and resources for cell-type deconvolution of bulk RNA-seq and spatial transcriptomics data
Deconvolution of human and mouse transcriptomics
scRNA-seq-informed deconvolution of bulk RNA-seq
Deconvolution of spatial transcriptomics data
Explore our collection of tools and resources for the exploration of deconvolution results and systematic method benchmarking
Simulator of pseudo-bulk RNA-seq data for deconvoluton benchmarking
Collection of validation RNA-seq datasets with matched ground-truth data
Interactive app for the exploration of deconvolution signatures and results
Comprehensive pipeline for the benchmarking of transcriptome-deconvolution methods
Computational tools for the deconvolution of methylation data
Deconvolution of DNA methylation data